LECTURE: Pipelines and Workflows

Overview

Teaching: 45 min
Exercises: 0 min

Questions

• Is it possible to run data-intensive computational pipelines (e.g. bioinformatics) in parallel on HPC?

• How about biomolecular simulation workflows?

Objectives

• Understand some of the challenges in involved in running bioinformatics software on HPC machines

• Learn about options for running biomolecular simulation workflows on HPCs

Slides

This part of the course will be delivered using a slide presentation:

Bioinformatics pipelines on HPC?

Adapting biomolecular workflows to HPC: BBioBB+PyCOMPSs

Key Points