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Reproducible Computational Environments Using Containers: Introduction to Podman and Apptainer
Reproducible Computational Environments Using Containers: Introduction to Podman and Apptainer
Key Points
Instructor Notes
Extract All Images
More
About
Creating Containers on the Cloud
Container Orchestration
Discussion
Using Docker with GitHub Actions
Glossary
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EPISODES
Summary and Schedule
1. Introducing Containers
2. Introducing the Podman Command Line
3. Exploring and Running Containers
4. Cleaning Up Containers
5. Finding Containers on a Registry
6. Creating Your Own Container Images
7. Creating More Complex Container Images
8. Overview of Apptainer
9. Using Apptainer to Run BLAST+
10. Containers in Research Workflows: Reproducibility and Granularity
RESOURCES
Key Points
Instructor Notes
Extract All Images
About
Creating Containers on the Cloud
Container Orchestration
Discussion
Using Docker with GitHub Actions
Glossary
See all in one page
All Images
Introducing Containers
Figure 1
Image 1 of 1: ‘An image comparing using a cookie cutter to the container workflow’
Introducing the Podman Command Line
Exploring and Running Containers
Cleaning Up Containers
Finding Containers on a Registry
Creating Your Own Container Images
Creating More Complex Container Images
Overview of Apptainer
Using Apptainer to Run BLAST+
Containers in Research Workflows: Reproducibility and Granularity
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